STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAKEGG: stp:Strop_3592 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family. (395 aa)    
Predicted Functional Partners:
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: stp:Strop_3591 xylulokinase.
 
 
 0.999
Sare_3490
PFAM: PfkB domain protein; KEGG: stp:Strop_3260 PfkB domain protein.
 
  
 0.924
Sare_4846
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: nca:Noca_3165 alcohol dehydrogenase GroES domain protein.
     
 0.911
Sare_0287
PFAM: ROK family protein; KEGG: stp:Strop_0246 ROK family protein.
    
 0.817
Sare_3506
TIGRFAM: putative glucokinase, ROK family; PFAM: ROK family protein; KEGG: stp:Strop_3274 putative glucokinase, ROK family.
    
 0.817
Sare_4775
PFAM: ROK family protein; KEGG: stp:Strop_4333 ROK family protein.
    
 0.817
Sare_4236
KEGG: stp:Strop_3846 hypothetical protein.
 
  
 0.658
Sare_3971
PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_3590 major facilitator superfamily MFS_1.
     
 0.598
Sare_4238
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: stp:Strop_3848 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.575
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
     
 0.526
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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