STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_3987PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: stp:Strop_3606 arginase/agmatinase/formiminoglutamase; Belongs to the arginase family. (395 aa)    
Predicted Functional Partners:
Sare_4053
TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: stp:Strop_3677 ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.948
Sare_2924
KEGG: stp:Strop_1716 scyllo-inosamine-4-phosphate amidinotransferase.
  
  
 0.921
Sare_0355
PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: sma:SAV3641 putative ornithine carbamoyltransferase.
    
 0.917
Sare_1885
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
    
 0.917
argJ
Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.
    
 0.916
Sare_3563
PFAM: Nitric oxide synthase NOS; KEGG: sen:SACE_5845 nitric oxide synthase oxygenase.
     
  0.900
Sare_3988
PFAM: Thioredoxin domain; KEGG: stp:Strop_3607 thioredoxin domain.
  
   0.860
arcA
Arginine deiminase; PFAM: amidinotransferase; KEGG: stp:Strop_4517 arginine deiminase.
    
 0.836
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: stp:Strop_1895 argininosuccinate lyase.
     
 0.833
Sare_2647
TIGRFAM: pyridoxal kinase; KEGG: stp:Strop_2472 pyridoxal kinase; Belongs to the pyridoxine kinase family.
   
 
  0.673
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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