STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4004PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_3622 ABC transporter related. (282 aa)    
Predicted Functional Partners:
Sare_4005
PFAM: ABC-2 type transporter; KEGG: stp:Strop_3623 ABC-2 type transporter.
 
  
 0.965
Sare_2584
PFAM: ABC-2 type transporter; KEGG: stp:Strop_2429 ABC-2 type transporter.
 
  
 0.648
Sare_4003
KEGG: stp:Strop_3621 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein.
       0.556
Sare_3388
PFAM: ABC-2 type transporter; KEGG: stp:Strop_3163 ABC-2 type transporter.
 
  
 0.553
Sare_4936
PFAM: ABC-2 type transporter; KEGG: sco:SCO3825 putative ABC-transporter transmembrane component.
  
 0.478
cysS
KEGG: stp:Strop_4222 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; Cysteinyl-tRNA synthetase class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   
 0.472
Sare_2043
PFAM: ABC-2 type transporter; KEGG: sco:SCO3825 putative ABC-transporter transmembrane component.
  
 0.447
Sare_4551
PFAM: ABC-2 type transporter; KEGG: sen:SACE_0423 multidrug ABC transporter permease.
  
 0.447
nucS
Protein of unknown function DUF91; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
       0.438
Sare_3403
TIGRFAM: ABC drug efflux pump, inner membrane subunit, DrrB family; PFAM: ABC-2 type transporter; KEGG: stp:Strop_3178 ABC drug efflux pump, inner membrane subunit, DrrB family.
  
 0.436
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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