STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4022PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: stp:Strop_3640 low molecular weight phosphotyrosine protein phosphatase. (204 aa)    
Predicted Functional Partners:
Sare_0661
KEGG: stp:Strop_0714 protein tyrosine/serine phosphatase.
     
 0.910
Sare_1131
Protein tyrosine/serine phosphatase; KEGG: stp:Strop_1241 hypothetical protein.
     
 0.910
Sare_3362
Protein tyrosine/serine phosphatase; KEGG: stp:Strop_3134 hypothetical protein.
     
 0.910
Sare_4023
TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: stp:Strop_3641 SUA5/YciO/YrdC/YwlC family protein; Belongs to the SUA5 family.
       0.873
Sare_2225
PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: stp:Strop_2086 beta-lactamase domain protein.
   
 
 0.859
Sare_2892
PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: stp:Strop_1960 beta-lactamase domain protein.
   
 
 0.859
Sare_3988
PFAM: Thioredoxin domain; KEGG: stp:Strop_3607 thioredoxin domain.
 
 
 0.758
Sare_0675
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: stp:Strop_0730 thioredoxin; Belongs to the thioredoxin family.
  
 
 0.725
Sare_5098
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: stp:Strop_4580 thioredoxin; Belongs to the thioredoxin family.
  
 
 0.725
prmC
Modification methylase, HemK family; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
       0.712
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.