STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4059PFAM: Patatin; KEGG: stp:Strop_3682 patatin. (276 aa)    
Predicted Functional Partners:
Sare_4058
PFAM: phospholipid/glycerol acyltransferase; KEGG: stp:Strop_3681 phospholipid/glycerol acyltransferase.
 
     0.958
Sare_4057
PFAM: CutA1 divalent ion tolerance protein; KEGG: stp:Strop_3680 CutA1 divalent ion tolerance protein.
       0.792
Sare_3847
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: stp:Strop_3468 ComEC/Rec2-related protein.
     
 0.605
Sare_4060
PFAM: glycosyl transferase group 1; KEGG: stp:Strop_3683 glycosyl transferase, group 1.
       0.560
Sare_4056
PFAM: fatty acid desaturase; KEGG: stp:Strop_3679 fatty acid desaturase.
     
 0.501
Sare_4069
KEGG: stp:Strop_3689 hypothetical protein.
 
     0.494
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
    0.443
Sare_4675
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
       0.438
Sare_4054
KEGG: stp:Strop_3678 hypothetical protein.
   
   0.425
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.