STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4066KEGG: sco:SCO0921 hypothetical protein. (256 aa)    
Predicted Functional Partners:
Sare_4065
PFAM: phospholipid/glycerol acyltransferase; KEGG: sen:SACE_6190 1-acylglycerol-3-phosphate O-acyltransferase.
 
  
 0.990
Sare_4064
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: stp:Strop_3686 response regulator receiver.
       0.584
Sare_4063
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: stp:Strop_3685 ATP-binding region, ATPase domain protein domain protein.
       0.582
Sare_4067
KEGG: stp:Strop_3687 hypothetical protein.
       0.572
Sare_4062
PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: stp:Strop_3684 peptidase S1 and S6, chymotrypsin/Hap.
       0.482
Sare_0723
KEGG: bmn:BMA10247_0293 hypothetical protein.
  
     0.478
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.