STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4068PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_3688 ABC transporter related. (311 aa)    
Predicted Functional Partners:
Sare_4069
KEGG: stp:Strop_3689 hypothetical protein.
 
     0.873
Sare_4067
KEGG: stp:Strop_3687 hypothetical protein.
       0.487
Sare_1600
KEGG: stp:Strop_0398 hypothetical protein.
 
 
 0.475
Sare_4070
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase E1 component; catalytic domain of components of various dehydrogenase complexes; Transketolase central region; KEGG: stp:Strop_3690 2-oxoglutarate dehydrogenase, E1 subunit.
     
 0.430
Sare_0297
KEGG: stp:Strop_0257 hypothetical protein.
 
 
 0.413
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.