Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Sare_1600 | Sare_4068 | KEGG: stp:Strop_0398 hypothetical protein. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_3688 ABC transporter related. | 0.475 |
Sare_1600 | Sare_4069 | KEGG: stp:Strop_0398 hypothetical protein. | KEGG: stp:Strop_3689 hypothetical protein. | 0.604 |
Sare_2649 | Sare_4069 | PFAM: alpha/beta hydrolase fold; KEGG: sma:SAV5711 hydrolase. | KEGG: stp:Strop_3689 hypothetical protein. | 0.436 |
Sare_2910 | Sare_4069 | KEGG: sco:SCO4448 hypothetical protein. | KEGG: stp:Strop_3689 hypothetical protein. | 0.463 |
Sare_4005 | Sare_4069 | PFAM: ABC-2 type transporter; KEGG: stp:Strop_3623 ABC-2 type transporter. | KEGG: stp:Strop_3689 hypothetical protein. | 0.427 |
Sare_4058 | Sare_4059 | PFAM: phospholipid/glycerol acyltransferase; KEGG: stp:Strop_3681 phospholipid/glycerol acyltransferase. | PFAM: Patatin; KEGG: stp:Strop_3682 patatin. | 0.958 |
Sare_4058 | Sare_4069 | PFAM: phospholipid/glycerol acyltransferase; KEGG: stp:Strop_3681 phospholipid/glycerol acyltransferase. | KEGG: stp:Strop_3689 hypothetical protein. | 0.617 |
Sare_4058 | Sare_4635 | PFAM: phospholipid/glycerol acyltransferase; KEGG: stp:Strop_3681 phospholipid/glycerol acyltransferase. | KEGG: stp:Strop_4205 hypothetical protein. | 0.535 |
Sare_4059 | Sare_4058 | PFAM: Patatin; KEGG: stp:Strop_3682 patatin. | PFAM: phospholipid/glycerol acyltransferase; KEGG: stp:Strop_3681 phospholipid/glycerol acyltransferase. | 0.958 |
Sare_4059 | Sare_4069 | PFAM: Patatin; KEGG: stp:Strop_3682 patatin. | KEGG: stp:Strop_3689 hypothetical protein. | 0.494 |
Sare_4067 | Sare_4068 | KEGG: stp:Strop_3687 hypothetical protein. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_3688 ABC transporter related. | 0.487 |
Sare_4067 | Sare_4069 | KEGG: stp:Strop_3687 hypothetical protein. | KEGG: stp:Strop_3689 hypothetical protein. | 0.495 |
Sare_4068 | Sare_1600 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_3688 ABC transporter related. | KEGG: stp:Strop_0398 hypothetical protein. | 0.475 |
Sare_4068 | Sare_4067 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_3688 ABC transporter related. | KEGG: stp:Strop_3687 hypothetical protein. | 0.487 |
Sare_4068 | Sare_4069 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_3688 ABC transporter related. | KEGG: stp:Strop_3689 hypothetical protein. | 0.873 |
Sare_4068 | Sare_4070 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_3688 ABC transporter related. | TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase E1 component; catalytic domain of components of various dehydrogenase complexes; Transketolase central region; KEGG: stp:Strop_3690 2-oxoglutarate dehydrogenase, E1 subunit. | 0.430 |
Sare_4069 | Sare_1600 | KEGG: stp:Strop_3689 hypothetical protein. | KEGG: stp:Strop_0398 hypothetical protein. | 0.604 |
Sare_4069 | Sare_2649 | KEGG: stp:Strop_3689 hypothetical protein. | PFAM: alpha/beta hydrolase fold; KEGG: sma:SAV5711 hydrolase. | 0.436 |
Sare_4069 | Sare_2910 | KEGG: stp:Strop_3689 hypothetical protein. | KEGG: sco:SCO4448 hypothetical protein. | 0.463 |
Sare_4069 | Sare_4005 | KEGG: stp:Strop_3689 hypothetical protein. | PFAM: ABC-2 type transporter; KEGG: stp:Strop_3623 ABC-2 type transporter. | 0.427 |
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