STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4077PFAM: Superoxide dismutase Ni-type; KEGG: stp:Strop_3697 superoxide dismutase. (134 aa)    
Predicted Functional Partners:
Sare_4076
Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: stp:Strop_3696 peptidase S24, S26A and S26B.
 
   
 0.904
katG
Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
     
 0.593
Sare_2202
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
     
 0.569
Sare_4078
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: stp:Strop_3698 hypothetical protein.
       0.553
Sare_1007
KEGG: stp:Strop_1117 hypothetical protein.
  
     0.456
mshD
GCN5-related N-acetyltransferase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.
  
     0.420
Sare_0296
PFAM: peptidase S15; ABC transporter related; X-Pro dipeptidyl-peptidase domain protein; SMART: AAA ATPase; KEGG: stp:Strop_0256 ABC transporter related.
  
     0.405
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.