STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4103PFAM: glycosyl transferase group 1; KEGG: stp:Strop_3722 glycosyl transferase, group 1. (400 aa)    
Predicted Functional Partners:
Sare_1749
TIGRFAM: phosphoheptose isomerase; PFAM: sugar isomerase (SIS); KEGG: stp:Strop_1763 phosphoheptose isomerase.
  
 0.832
Sare_1746
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: glycosyl transferase family 9; Haloacid dehalogenase domain protein hydrolase; KEGG: stp:Strop_1760 hydrolase, HAD-superfamily, subfamily IIIA.
 
  
 0.762
Sare_1747
KEGG: stp:Strop_1761 hypothetical protein.
  
     0.762
Sare_1752
PFAM: glycosyl transferase family 9; KEGG: stp:Strop_1766 glycosyl transferase, family 9.
 
  
 0.746
Sare_4362
PFAM: glycosyl transferase family 9; KEGG: stp:Strop_3977 glycosyl transferase, family 9.
 
  
 0.699
Sare_1751
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_1765 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.683
Sare_1750
Cytidyltransferase-related domain; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
 
   
 0.681
Sare_4361
PFAM: glycosyl transferase family 2; KEGG: stp:Strop_3976 glycosyl transferase, family 2.
 
   
 0.638
Sare_1742
KEGG: stp:Strop_1756 hypothetical protein.
  
     0.629
Sare_4360
rfaE bifunctional protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
 
   
 0.577
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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