STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4111KEGG: stp:Strop_3730 hypothetical protein. (337 aa)    
Predicted Functional Partners:
Sare_4112
KEGG: stp:Strop_3731 hypothetical protein.
 
     0.738
Sare_4110
PFAM: protein of unknown function UPF0182; KEGG: stp:Strop_3729 protein of unknown function UPF0182.
       0.628
Sare_3847
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: stp:Strop_3468 ComEC/Rec2-related protein.
       0.584
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
     0.546
Sare_3846
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: stp:Strop_3467 DNA polymerase III, delta subunit.
 
     0.509
Sare_3432
PFAM: DivIVA family protein; KEGG: stp:Strop_3206 DivIVA family protein.
 
     0.474
Sare_3892
TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: stp:Strop_3517 aminopeptidase N.
  
     0.430
Sare_2517
Transcriptional regulator, MerR family; SMART: regulatory protein MerR; KEGG: stp:Strop_2379 regulatory protein, MerR.
  
     0.422
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.