STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4116PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: stp:Strop_3735 hypothetical protein. (350 aa)    
Predicted Functional Partners:
Sare_4117
PFAM: ABC-1 domain protein; KEGG: stp:Strop_3736 ABC-1 domain protein.
       0.923
Sare_4278
TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: stp:Strop_3887 thiamine biosynthesis protein ThiS.
  
 
 0.881
thiG
Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
  
 0.773
Sare_5056
PFAM: molybdopterin biosynthesis MoaE protein; KEGG: stp:Strop_4546 molybdopterin biosynthesis MoaE protein.
  
 0.772
Sare_2053
KEGG: mjl:Mjls_3186 hypothetical protein.
  
 
 0.702
Sare_1106
PFAM: aminotransferase class V; KEGG: stp:Strop_1213 aminotransferase, class V.
   
 0.696
Sare_3533
Cysteine desulfurase; PFAM: aminotransferase class V; KEGG: stp:Strop_3301 aminotransferase, class V.
   
 0.696
Sare_3423
PFAM: peptidase S16 lon domain protein; KEGG: stp:Strop_3197 peptidase S16, lon domain protein.
    
 0.688
thiC
Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family.
  
  
 0.677
Sare_1583
KEGG: stp:Strop_1051 hypothetical protein.
  
 0.627
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.