STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4138PFAM: protein of unknown function DUF541; KEGG: stp:Strop_3756 protein of unknown function DUF541. (214 aa)    
Predicted Functional Partners:
Sare_4137
KEGG: stp:Strop_3755 hypothetical protein.
       0.800
pheT
KEGG: stp:Strop_1887 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit.
       0.684
Sare_4139
PFAM: Prephenate dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: stp:Strop_3757 prephenate dehydrogenase.
       0.644
Sare_4641
PFAM: ADP-ribosylation/Crystallin J1; KEGG: stp:Strop_4210 ADP-ribosylation/crystallin J1.
 
     0.621
Sare_4140
PFAM: aminotransferase class I and II; KEGG: stp:Strop_3758 aminotransferase, class I and II.
       0.619
Sare_4141
4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.614
Sare_3118
KEGG: stp:Strop_2918 hypothetical protein.
  
     0.570
Sare_1349
KEGG: stp:Strop_1391 hypothetical protein.
  
     0.528
Sare_4373
KEGG: stp:Strop_3989 hypothetical protein.
 
     0.502
Sare_2392
KEGG: stp:Strop_2273 hypothetical protein.
  
     0.498
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.