STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4146PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: stp:Strop_3764 peptidase S9, prolyl oligopeptidase active site domain protein. (714 aa)    
Predicted Functional Partners:
mshB
LmbE family protein; Catalyzes the deacetylation of 1D-myo-inositol 2-acetamido-2- deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway.
       0.651
Sare_4144
KEGG: stp:Strop_3762 hypothetical protein.
       0.608
Sare_4147
PFAM: peptidase U62 modulator of DNA gyrase; KEGG: stp:Strop_3765 peptidase U62, modulator of DNA gyrase.
       0.524
Sare_4148
PFAM: peptidase U62 modulator of DNA gyrase; KEGG: stp:Strop_3766 peptidase U62, modulator of DNA gyrase.
       0.524
Sare_2232
KEGG: stp:Strop_2091 hypothetical protein.
  
     0.511
Sare_1160
PFAM: helix-turn-helix domain protein; KEGG: stp:Strop_1270 helix-turn-helix domain protein.
  
     0.498
Sare_3600
PFAM: Bifunctional DNA primase/polymerase; KEGG: stp:Strop_3360 hypothetical protein.
  
     0.485
Sare_4123
SMART: helix-turn-helix domain protein; KEGG: stp:Strop_3742 helix-turn-helix domain protein.
  
     0.482
Sare_1300
SMART: helix-turn-helix domain protein; KEGG: stp:Strop_1349 hypothetical protein.
  
     0.475
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 518 of 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
     
 0.472
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.