STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4170PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_3790 ABC transporter related. (304 aa)    
Predicted Functional Partners:
Sare_4169
KEGG: stp:Strop_3789 hypothetical protein.
 
 
 0.986
Sare_4167
KEGG: stp:Strop_3787 hypothetical protein.
 
 
 0.967
Sare_4168
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_3788 ABC transporter related.
 
    
0.934
Sare_4171
KEGG: stp:Strop_3791 hypothetical protein.
       0.537
Sare_1154
KEGG: stp:Strop_1263 hypothetical protein.
  
     0.478
Sare_4172
PFAM: adenylylsulfate kinase; KEGG: stp:Strop_3792 adenylylsulfate kinase.
     
 0.425
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.