STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4178PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_3798 binding-protein-dependent transport systems inner membrane component. (322 aa)    
Predicted Functional Partners:
Sare_4177
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_3797 binding-protein-dependent transport systems inner membrane component.
 
 0.997
Sare_4176
4-phytase; PFAM: extracellular solute-binding protein family 5; KEGG: stp:Strop_3796 4-phytase.
 
 
 0.990
Sare_4210
KEGG: stp:Strop_3820 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.989
Sare_1665
KEGG: stp:Strop_1673 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.986
Sare_4209
KEGG: stp:Strop_3819 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 0.983
Sare_4213
PFAM: extracellular solute-binding protein family 5; KEGG: stp:Strop_3823 4-phytase.
 
 
 0.981
Sare_4381
PFAM: extracellular solute-binding protein family 5; KEGG: stp:Strop_2461 4-phytase.
 
 
 0.981
Sare_4179
KEGG: stp:Strop_3799 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.975
Sare_4180
KEGG: stp:Strop_3800 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.967
Sare_4212
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_3822 binding-protein-dependent transport systems inner membrane component.
 
0.960
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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