STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4191Transcriptional regulator, SARP family; PFAM: transcriptional regulator domain protein; transcriptional activator domain; SMART: AAA ATPase; KEGG: sma:SAV3804 transcriptional regulator. (621 aa)    
Predicted Functional Partners:
Sare_5020
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: stp:Strop_4510 cell envelope-related function transcriptional attenuator, LytR/CpsA family.
   
    0.631
Sare_1291
PFAM: protein of unknown function DUF742; KEGG: stp:Strop_3597 protein of unknown function DUF742.
  
     0.549
Sare_2066
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: sma:SAV1371 AraC-family transcriptional regulator.
   
    0.532
Sare_0422
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: stp:Strop_0352 haloacid dehalogenase domain protein hydrolase.
   
    0.525
Sare_3123
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rha:RHA1_ro03596 probable transcriptional regulator, LysR family.
   
    0.520
Sare_2199
PFAM: helix-turn-helix HxlR type; KEGG: mgi:Mflv_5238 transcriptional regulator, HxlR family.
   
    0.509
Sare_1635
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: stp:Strop_1650 regulatory protein, LuxR.
   
    0.497
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
   
  
 0.485
Sare_0035
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: stp:Strop_0029 helix-turn-helix domain protein.
  
    0.482
Sare_2516
PFAM: Silent information regulator protein Sir2; KEGG: stp:Strop_2378 silent information regulator protein Sir2.
   
    0.482
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.