STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4205PFAM: peptidase M23B; KEGG: stp:Strop_3815 peptidase M23B. (236 aa)    
Predicted Functional Partners:
Sare_0919
Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 
 0.797
Sare_3923
PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: stp:Strop_3548 glycosyl transferase, family 51.
  
   
 0.658
Sare_4796
PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; SMART: PASTA domain containing protein; KEGG: stp:Strop_4354 glycosyl transferase, family 51.
  
     0.613
Sare_3240
PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: stp:Strop_3015 glycosyl transferase, family 51.
  
   
 0.611
Sare_5078
PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: stp:Strop_4560 glycosyl transferase, family 51.
  
   
 0.578
Sare_4021
PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: stp:Strop_3639 glycosyl transferase, family 51.
  
     0.573
Sare_4206
PFAM: peptidase M23B; KEGG: stp:Strop_3816 peptidase M23B.
 
   
0.545
Sare_0051
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; KEGG: stp:Strop_0046 peptidoglycan glycosyltransferase.
 
  
 0.477
Sare_3519
(p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
    0.404
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.