STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4224PFAM: FAD dependent oxidoreductase; KEGG: stp:Strop_3834 FAD dependent oxidoreductase. (564 aa)    
Predicted Functional Partners:
Sare_2810
KEGG: stp:Strop_2611 cholesterol oxidase.
  
  
 
0.926
Sare_2811
PFAM: cytochrome P450; KEGG: stp:Strop_2612 cytochrome P450.
     
 0.905
Sare_3526
PFAM: cytochrome c class I; KEGG: stp:Strop_3294 cytochrome c, class I.
   
 
 0.779
Sare_1583
KEGG: stp:Strop_1051 hypothetical protein.
    
 0.716
Sare_4226
TIGRFAM: IMP dehydrogenase family protein; KEGG: stp:Strop_3836 IMP dehydrogenase family protein.
     
 0.661
Sare_4225
PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: stp:Strop_3835 peptidase M1, membrane alanine aminopeptidase.
       0.641
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.623
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
  
 0.617
Sare_0415
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: stp:Strop_0345 NAD-dependent epimerase/dehydratase.
  
   
 0.486
Sare_4228
KEGG: stp:Strop_3838 hypothetical protein.
       0.473
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.