STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4236KEGG: stp:Strop_3846 hypothetical protein. (365 aa)    
Predicted Functional Partners:
Sare_4237
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_3847 ABC transporter related.
 
 0.992
Sare_4238
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: stp:Strop_3848 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.989
Sare_4239
PFAM: ROK family protein; KEGG: stp:Strop_3849 ROK family protein.
 
     0.704
xylA
KEGG: stp:Strop_3592 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
 
  
 0.658
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: stp:Strop_3591 xylulokinase.
 
   
 0.556
Sare_4235
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: stp:Strop_2301 methyltransferase type 11.
       0.487
psuG
Indigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
  
    0.420
Sare_3967
PFAM: extracellular solute-binding protein family 1; KEGG: stp:Strop_3587 extracellular solute-binding protein, family 1.
  
  
 0.408
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.