STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4256Hypothetical protein. (101 aa)    
Predicted Functional Partners:
Sare_4257
KEGG: stp:Strop_3866 hypothetical protein.
       0.923
Sare_4262
PFAM: transcriptional regulator domain protein; Uroporphyrinogen III synthase HEM4; KEGG: stp:Strop_3871 uroporphyrinogen III synthase HEM4.
       0.587
Sare_4260
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: stp:Strop_3869 nitrite reductase (NAD(P)H), large subunit.
       0.584
Sare_4261
TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_3870 nitrite reductase (NAD(P)H), small subunit.
       0.584
Sare_4258
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: stp:Strop_3867 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.579
Sare_4259
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: stp:Strop_3868 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.579
Sare_4255
TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_3865 nitrite transporter.
       0.476
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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