STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4264PFAM: protein of unknown function DUF742; KEGG: stp:Strop_3873 protein of unknown function DUF742. (121 aa)    
Predicted Functional Partners:
Sare_4263
PFAM: protein of unknown function ATP binding; Miro domain protein; KEGG: stp:Strop_3872 protein of unknown function, ATP binding.
 
  
 0.972
Sare_4266
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: stp:Strop_3875 ATP-binding region, ATPase domain protein domain protein.
 
 
 0.930
Sare_4265
PFAM: Roadblock/LC7 family protein; KEGG: stp:Strop_3874 roadblock/LC7 family protein.
 
  
 0.917
Sare_0763
PFAM: protein of unknown function ATP binding; KEGG: stp:Strop_0819 protein of unknown function, ATP binding.
 
  
 0.875
Sare_3225
PFAM: protein of unknown function ATP binding; KEGG: tfu:Tfu_0943 putative ATP/GTP-binding protein.
 
  
 0.873
Sare_0761
PFAM: Roadblock/LC7 family protein; KEGG: stp:Strop_0817 roadblock/LC7 family protein.
 
  
 0.821
Sare_3227
PFAM: Roadblock/LC7 family protein; KEGG: tfu:Tfu_0941 conserved hypothetical protein.
 
  
 0.821
Sare_0760
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; Nitrate and nitrite sensing domain protein; KEGG: stp:Strop_0816 ATP-binding region, ATPase domain protein domain protein.
 
 
 0.814
Sare_1289
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; Nitrate and nitrite sensing domain protein; KEGG: sma:SAV1582 sensor-like histidine kinase.
 
 
 0.801
Sare_1290
PFAM: Roadblock/LC7 family protein; KEGG: sen:SACE_1954 hypothetical protein.
 
   
 0.790
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.