STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4271PFAM: luciferase family protein; KEGG: stp:Strop_3880 luciferase family protein. (316 aa)    
Predicted Functional Partners:
Sare_4270
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_3879 ABC transporter related.
 
  
 0.852
Sare_4272
KEGG: stp:Strop_3881 hypothetical protein.
       0.785
Sare_4642
KEGG: stp:Strop_4211 hypothetical protein.
  
   
 0.729
Sare_0978
KEGG: stp:Strop_1090 hypothetical protein.
  
   
 0.683
Sare_0886
TIGRFAM: LPPG domain containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: stp:Strop_0944 LPPG domain containing protein.
 
   
 0.674
Sare_1321
KEGG: stp:Strop_1364 hypothetical protein.
  
     0.670
Sare_0885
TIGRFAM: F420-dependent oxidoreductase, putative; PFAM: protein of unknown function DUF129; KEGG: stp:Strop_0943 F420-dependent oxidoreductase, putative.
 
   
 0.668
Sare_4269
PFAM: NMT1/THI5 like domain protein; KEGG: stp:Strop_3878 membrane lipoprotein lipid attachment site.
  
  
 0.621
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
   
 
 0.601
Sare_2468
PFAM: protein of unknown function DUF129; KEGG: stp:Strop_1147 protein of unknown function DUF129.
 
   
 0.586
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.