STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4349KEGG: stp:Strop_3965 hypothetical protein. (324 aa)    
Predicted Functional Partners:
Sare_3891
KEGG: stp:Strop_3516 hypothetical protein.
   
    0.729
Sare_0675
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: stp:Strop_0730 thioredoxin; Belongs to the thioredoxin family.
   
    0.675
Sare_4350
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: stp:Strop_3966 hypothetical protein.
       0.650
Sare_0978
KEGG: stp:Strop_1090 hypothetical protein.
  
   
 0.603
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
   
 
 0.601
Sare_3116
PFAM: luciferase family protein; KEGG: stp:Strop_2916 luciferase family protein.
  
     0.561
Sare_4348
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: stp:Strop_3964 regulatory protein, TetR.
       0.558
Sare_4271
PFAM: luciferase family protein; KEGG: stp:Strop_3880 luciferase family protein.
  
     0.545
Sare_4642
KEGG: stp:Strop_4211 hypothetical protein.
  
   
 0.533
Sare_2491
PFAM: luciferase family protein; KEGG: stp:Strop_2346 luciferase family protein.
  
     0.532
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.