STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4352TIGRFAM: DNA polymerase LigD ligase region; PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: stp:Strop_3968 ATP dependent DNA ligase. (313 aa)    
Predicted Functional Partners:
Sare_4351
TIGRFAM: DNA polymerase LigD polymerase domain; PFAM: DNA primase small subunit; KEGG: stp:Strop_3967 DNA primase, small subunit.
  
 0.999
Sare_4039
TIGRFAM: DNA polymerase LigD polymerase domain; PFAM: DNA primase small subunit; KEGG: stp:Strop_3663 DNA primase, small subunit.
  
 0.997
Sare_1486
TIGRFAM: DNA polymerase LigD polymerase domain; PFAM: DNA primase small subunit; KEGG: stp:Strop_1543 DNA primase, small subunit.
   
 0.978
Sare_2236
PFAM: DNA primase small subunit; KEGG: stp:Strop_2095 DNA primase, small subunit.
   
 0.978
Sare_0002
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 0.952
Sare_0479
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; DNA polymerase III beta chain; KEGG: sco:SCO1180 DNA polymerase III beta chain.
   
 0.952
ku
Ku family containing protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
  
 0.939
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.906
Sare_1721
TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: stp:Strop_1736 exodeoxyribonuclease III Xth.
  
 
 0.776
Sare_1746
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: glycosyl transferase family 9; Haloacid dehalogenase domain protein hydrolase; KEGG: stp:Strop_1760 hydrolase, HAD-superfamily, subfamily IIIA.
   
 0.748
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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