STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4358PFAM: AMP-dependent synthetase and ligase; KEGG: stp:Strop_3973 AMP-dependent synthetase and ligase. (549 aa)    
Predicted Functional Partners:
Sare_2407
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: sde:Sde_3725 polyketide synthase modules and related proteins-like.
  
0.916
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
  
 
0.875
Sare_1511
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: stp:Strop_1562 acyl-CoA dehydrogenase domain protein.
  
 
 0.697
Sare_2079
PFAM: condensation domain protein; phosphopantetheine-binding; KEGG: stp:Strop_2647 condensation domain protein.
 
 
 0.692
Sare_1054
PFAM: AMP-dependent synthetase and ligase; KEGG: stp:Strop_2492 AMP-dependent synthetase and ligase.
  
     0.634
Sare_2814
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: stp:Strop_2615 acyl-CoA dehydrogenase domain protein.
  
 
 0.597
Sare_2822
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: stp:Strop_2624 acyl-CoA dehydrogenase domain protein.
  
 
 0.595
Sare_2816
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: stp:Strop_2617 acyl-CoA dehydrogenase domain protein.
  
 
 0.592
Sare_2818
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: stp:Strop_2619 acyl-CoA dehydrogenase domain protein.
  
 
 0.590
Sare_0086
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: stp:Strop_0089 acyl-CoA dehydrogenase domain protein.
  
 
 0.588
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.