STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4407TIGRFAM: FAD-linked oxidoreductase; PFAM: FAD linked oxidase domain protein; D-arabinono-14-lactone oxidase; KEGG: stp:Strop_4026 FAD-linked oxidoreductase. (437 aa)    
Predicted Functional Partners:
Sare_4405
KEGG: stp:Strop_4024 hypothetical protein.
 
    0.827
Sare_3115
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_2915 short-chain dehydrogenase/reductase SDR.
 
 
    0.595
Sare_1512
PFAM: aminoglycoside phosphotransferase; KEGG: stp:Strop_1563 aminoglycoside phosphotransferase.
  
 
   0.586
Sare_4406
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: stp:Strop_4025 regulatory protein, TetR.
       0.550
Sare_0027
PFAM: lipolytic protein G-D-S-L family; KEGG: stp:Strop_0023 lipolytic enzyme, G-D-S-L family.
 
     0.546
Sare_1511
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: stp:Strop_1562 acyl-CoA dehydrogenase domain protein.
  
 
   0.485
Sare_3392
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: stp:Strop_3167 ferredoxin-dependent glutamate synthase.
     
 0.436
Sare_3504
PFAM: flavin-containing monooxygenase FMO; KEGG: stp:Strop_3273 flavin-containing monooxygenase FMO.
 
   
 0.415
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.