STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4417KEGG: stp:Strop_4035 hypothetical protein. (133 aa)    
Predicted Functional Partners:
Sare_4418
KEGG: stp:Strop_4036 hypothetical protein.
 
     0.852
Sare_4416
KEGG: stp:Strop_4034 hypothetical protein.
 
     0.851
Sare_4422
KEGG: stp:Strop_4040 hypothetical protein.
 
     0.838
Sare_4419
PFAM: type II secretion system protein; KEGG: stp:Strop_4037 type II secretion system protein.
       0.733
Sare_4420
KEGG: stp:Strop_4038 hypothetical protein.
       0.733
Sare_4421
PFAM: type II secretion system protein E; KEGG: stp:Strop_4039 type II secretion system protein E.
       0.733
Sare_3541
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: stp:Strop_3309 tetratricopeptide TPR_2 repeat protein.
  
     0.533
Sare_4897
KEGG: stp:Strop_4422 hypothetical protein.
  
     0.529
Sare_3426
KEGG: stp:Strop_3200 hypothetical protein.
  
     0.511
Sare_2111
KEGG: stp:Strop_2359 GCN5-related N-acetyltransferase.
  
     0.505
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.