STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4422KEGG: stp:Strop_4040 hypothetical protein. (366 aa)    
Predicted Functional Partners:
Sare_4421
PFAM: type II secretion system protein E; KEGG: stp:Strop_4039 type II secretion system protein E.
 
     0.882
Sare_4420
KEGG: stp:Strop_4038 hypothetical protein.
 
     0.863
Sare_4417
KEGG: stp:Strop_4035 hypothetical protein.
 
     0.838
Sare_4419
PFAM: type II secretion system protein; KEGG: stp:Strop_4037 type II secretion system protein.
 
     0.836
Sare_3974
PFAM: sugar transferase; KEGG: stp:Strop_3593 undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.773
Sare_4416
KEGG: stp:Strop_4034 hypothetical protein.
       0.771
Sare_4418
KEGG: stp:Strop_4036 hypothetical protein.
       0.771
Sare_4457
NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.
    
 0.686
Sare_4459
TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: stp:Strop_4061 NADH-quinone oxidoreductase, E subunit.
     
 0.673
Sare_4458
NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
     
 0.669
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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