STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4448PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: stp:Strop_4050 regulatory protein, IclR. (260 aa)    
Predicted Functional Partners:
Sare_0094
PFAM: Allophanate hydrolase subunit 1; KEGG: stp:Strop_0097 allophanate hydrolase subunit 1.
  
    0.695
Sare_0095
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: stp:Strop_0098 UreA amidolyase related protein.
  
    0.659
Sare_3599
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: stp:Strop_3359 helix-turn-helix domain protein.
  
    0.582
Sare_4736
KEGG: stp:Strop_4300 hypothetical protein.
  
     0.578
Sare_1148
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: stp:Strop_1257 regulatory protein, IclR.
  
     0.484
Sare_3914
KEGG: stp:Strop_3539 hypothetical protein.
  
     0.470
Sare_0169
KEGG: stp:Strop_0160 hypothetical protein.
  
     0.455
Sare_0764
KEGG: stp:Strop_0820 hypothetical protein.
  
     0.447
Sare_3520
PFAM: NUDIX hydrolase; KEGG: stp:Strop_3288 NUDIX hydrolase.
  
     0.439
Sare_4608
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: stp:Strop_0496 regulatory protein, IclR.
  
     0.438
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.