STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4492Hypothetical protein. (467 aa)    
Predicted Functional Partners:
Sare_4491
PFAM: Cupin 2 conserved barrel domain protein.
       0.773
Sare_4493
KEGG: cyb:CYB_0934 hypothetical protein.
       0.773
Sare_4494
KEGG: bte:BTH_II1195 oxidoreductase, short chain dehydrogenase/reductase family.
       0.773
Sare_4490
Hypothetical protein; KEGG: kra:Krad_3679 glycosyl transferase group 1.
       0.686
Sare_4495
PFAM: glycosyl transferase family 2; KEGG: kra:Krad_4447 glycosyl transferase family 2.
       0.457
Sare_4489
KEGG: fal:FRAAL2150 hypothetical protein; putative TAT and TPR domains.
       0.448
glyQ
glycyl-tRNA synthetase, beta subunit; KEGG: fra:Francci3_1275 glycine--tRNA ligase; TIGRFAM: glycyl-tRNA synthetase, alpha subunit; glycyl-tRNA synthetase, beta subunit; PFAM: glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase beta subunit.
       0.427
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.