STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4517PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: stp:Strop_4097 cytochrome c biogenesis protein, transmembrane region. (285 aa)    
Predicted Functional Partners:
Sare_4515
PFAM: cytochrome c assembly protein; KEGG: stp:Strop_4095 cytochrome c assembly protein.
 
  
 0.994
Sare_4516
PFAM: ResB family protein; KEGG: stp:Strop_4096 ResB family protein.
 
  
 0.993
Sare_4518
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: stp:Strop_4098 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
 
  
 0.993
Sare_4519
PFAM: Phosphoglycerate mutase; KEGG: stp:Strop_4099 phosphoglycerate mutase.
  
    0.950
hemL
TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: stp:Strop_4100 glutamate-1-semialdehyde-2,1-aminomutase.
  
  
 0.898
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
  
 0.716
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
     
 0.698
Sare_3527
PFAM: cytochrome c oxidase subunit III; KEGG: stp:Strop_3295 cytochrome c oxidase, subunit III.
  
   
 0.661
Sare_4513
TIGRFAM: 4-hydroxybenzoate polyprenyltransferase, putative; PFAM: UbiA prenyltransferase; KEGG: stp:Strop_4093 4-hydroxybenzoate polyprenyltransferase, putative; Belongs to the UbiA prenyltransferase family.
       0.596
Sare_4514
TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: stp:Strop_4094 UbiD family decarboxylase; Belongs to the UbiD family.
       0.584
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.