STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4576PFAM: UspA domain protein; KEGG: nca:Noca_4870 UspA domain protein. (276 aa)    
Predicted Functional Partners:
Sare_4577
PFAM: UspA domain protein; KEGG: mjl:Mjls_1018 UspA domain protein.
 
     0.805
Sare_1892
PFAM: UspA domain protein; KEGG: stp:Strop_1901 UspA domain protein.
  
     0.717
Sare_4578
PFAM: UspA domain protein; KEGG: mbn:Mboo_2196 UspA domain protein.
 
     0.576
whiB
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.523
Sare_4579
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: sen:SACE_2467 cation-transporting ATPase.
  
  
 0.501
Sare_1534
PFAM: UspA domain protein; KEGG: stp:Strop_1583 UspA domain protein.
  
     0.499
pafA
Protein of unknown function DUF245 domain protein; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine.
  
     0.493
Sare_2359
PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: stp:Strop_2242 protein of unknown function DUF245 domain protein.
  
     0.491
Sare_4575
PFAM: PEP-utilising protein mobile region; KEGG: fra:Francci3_2689 pyruvate phosphate dikinase, PEP/pyruvate-binding.
     
 0.411
Sare_4749
KEGG: stp:Strop_4311 hypothetical protein.
  
    0.400
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.