STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4589PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: kra:Krad_4034 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (237 aa)    
Predicted Functional Partners:
Sare_4588
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: fal:FRAAL5600 putative DNA-binding protein.
 
     0.753
Sare_2205
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mms:mma_2399 hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.730
Sare_4590
NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: sco:SCO2200 hypothetical protein.
  
   0.708
Sare_0635
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_0661 short-chain dehydrogenase/reductase SDR.
  
     0.700
Sare_0671
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: stp:Strop_0725 short-chain dehydrogenase/reductase SDR.
  
     0.680
Sare_3002
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SMa0059 hypothetical protein.
  
     0.677
Sare_2959
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_0374 short-chain dehydrogenase/reductase SDR.
  
     0.670
Sare_0583
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dra:DR_1467 short chain dehydrogenase.
  
     0.653
Sare_0445
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_0374 short-chain dehydrogenase/reductase SDR.
  
     0.627
Sare_2830
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_2633 short-chain dehydrogenase/reductase SDR.
  
     0.619
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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