STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4598PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_4172 ABC transporter related. (494 aa)    
Predicted Functional Partners:
Sare_4597
PFAM: cobalt transport protein; KEGG: stp:Strop_4171 cobalt transport protein.
 
 
 0.971
Sare_4595
TIGRFAM: conserved hypothetical integral membrane protein; PFAM: Conserved hypothetical CHP02185 integral membrane family protein; KEGG: stp:Strop_4169 hypothetical protein.
 
   
 0.952
Sare_4596
KEGG: stp:Strop_4170 hypothetical protein.
       0.785
Sare_4072
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
   
    0.694
Sare_3823
PFAM: cobalt transport protein; KEGG: stp:Strop_3444 cobalt transport protein.
 
 0.683
Sare_3740
Prophage antirepressor; PFAM: BRO domain protein; KEGG: stp:Strop_4013 BRO domain protein domain protein.
  
     0.450
Sare_3791
Prophage antirepressor; PFAM: BRO domain protein; KEGG: stp:Strop_4013 BRO domain protein domain protein.
  
     0.450
Sare_3821
KEGG: stp:Strop_3442 hypothetical protein.
 
  
 0.434
Sare_1008
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: stp:Strop_1118 cobalt ABC transporter, inner membrane subunit CbiQ.
 
 
 0.432
Sare_2791
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: stp:Strop_2593 cobalt ABC transporter, inner membrane subunit CbiQ.
  
 
 0.432
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.