STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4603KEGG: stp:Strop_4181 hypothetical protein. (112 aa)    
Predicted Functional Partners:
Sare_4604
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: stp:Strop_4182 short-chain dehydrogenase/reductase SDR.
       0.773
Sare_0933
KEGG: stp:Strop_1434 hypothetical protein.
  
     0.624
Sare_0951
KEGG: stp:Strop_3153 hypothetical protein.
  
     0.551
Sare_2506
KEGG: stp:Strop_2355 hypothetical protein.
  
     0.535
Sare_0092
KEGG: stp:Strop_0095 hypothetical protein.
  
     0.525
Sare_1397
KEGG: stp:Strop_1433 hypothetical protein.
  
     0.525
Sare_3280
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3054 lantibiotic dehydratase domain protein.
  
     0.495
Sare_3642
PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_1729 major facilitator superfamily MFS_1.
  
     0.476
Sare_1931
KEGG: stp:Strop_0067 hypothetical protein.
  
     0.467
Sare_1825
PFAM: lipopolysaccharide biosynthesis protein; KEGG: stp:Strop_1834 lipopolysaccharide biosynthesis protein.
  
     0.453
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.