STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4606Transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; transcriptional activator domain; Tetratricopeptide TPR_4; KEGG: stp:Strop_0492 transcriptional regulator, winged helix family. (941 aa)    
Predicted Functional Partners:
Sare_4605
KEGG: stp:Strop_0491 hypothetical protein.
 
     0.691
Sare_2554
KEGG: stp:Strop_2405 hypothetical protein.
  
     0.682
Sare_3280
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3054 lantibiotic dehydratase domain protein.
  
     0.622
Sare_3272
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3046 lantibiotic dehydratase domain protein.
  
     0.616
Sare_1825
PFAM: lipopolysaccharide biosynthesis protein; KEGG: stp:Strop_1834 lipopolysaccharide biosynthesis protein.
  
     0.598
Sare_3271
PFAM: Lantibiotic dehydratase domain protein; KEGG: stp:Strop_3045 lantibiotic dehydratase domain protein.
  
     0.596
Sare_0475
PFAM: protein of unknown function DUF1275; KEGG: stp:Strop_0407 protein of unknown function DUF1275.
  
     0.593
Sare_2722
KEGG: stp:Strop_3013 hypothetical protein.
  
     0.593
Sare_1635
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: stp:Strop_1650 regulatory protein, LuxR.
  
  
 0.591
Sare_3349
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: stp:Strop_3119 peptidase S1 and S6, chymotrypsin/Hap.
  
     0.590
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.