STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4608PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: stp:Strop_0496 regulatory protein, IclR. (255 aa)    
Predicted Functional Partners:
Sare_0094
PFAM: Allophanate hydrolase subunit 1; KEGG: stp:Strop_0097 allophanate hydrolase subunit 1.
 
    0.738
Sare_0095
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: stp:Strop_0098 UreA amidolyase related protein.
 
    0.704
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
     
 0.662
Sare_4609
TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: stp:Strop_0495 MIP family channel protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
 
     0.591
Sare_4660
Transcriptional regulator, IclR family; PFAM: regulatory protein IclR; KEGG: stp:Strop_4223 regulatory protein, IclR.
  
     0.531
Sare_2998
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: smd:Smed_3725 GntR domain protein.
 
  
 0.445
Sare_4448
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: stp:Strop_4050 regulatory protein, IclR.
  
     0.438
leuC
3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
  
  
 0.436
glpK-2
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
     
 0.435
Sare_0096
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
    0.422
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.