STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4635KEGG: stp:Strop_4205 hypothetical protein. (276 aa)    
Predicted Functional Partners:
Sare_4636
PFAM: peptidase C60 sortase A and B; KEGG: stp:Strop_4206 peptidase C60, sortase A and B.
 
     0.915
Sare_4058
PFAM: phospholipid/glycerol acyltransferase; KEGG: stp:Strop_3681 phospholipid/glycerol acyltransferase.
  
    0.535
Sare_4069
KEGG: stp:Strop_3689 hypothetical protein.
  
    0.468
Sare_3887
KEGG: stp:Strop_3512 GCN5-related N-acetyltransferase.
  
     0.457
Sare_3909
PFAM: peptidase C60 sortase A and B; KEGG: stp:Strop_3534 peptidase C60, sortase A and B.
 
     0.439
Sare_1719
PFAM: peptidase C60 sortase A and B; KEGG: stp:Strop_1734 peptidase C60, sortase A and B.
 
     0.435
Sare_2507
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: stp:Strop_2356 endonuclease/exonuclease/phosphatase.
  
     0.431
Sare_0778
KEGG: tfu:Tfu_1898 putative lipoprotein.
 
 
   0.406
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.