STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4663PFAM: protein of unknown function DUF6 transmembrane; KEGG: stp:Strop_4226 protein of unknown function DUF6, transmembrane. (320 aa)    
Predicted Functional Partners:
Sare_4664
PFAM: protein of unknown function DUF1470; KEGG: stp:Strop_4227 protein of unknown function DUF1470.
 
   
 0.905
Sare_4662
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: stp:Strop_4225 HAD-superfamily hydrolase, subfamily IA, variant 3.
       0.738
Sare_4661
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: stp:Strop_4224 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
       0.566
Sare_0408
PFAM: protein of unknown function DUF1470; KEGG: stp:Strop_0341 protein of unknown function DUF1470.
 
   
 0.562
Sare_3411
PFAM: protein of unknown function DUF161; KEGG: stp:Strop_3185 protein of unknown function DUF161.
  
     0.403
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.