STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4680KEGG: stp:Strop_4250 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase. (401 aa)    
Predicted Functional Partners:
Sare_4688
PFAM: homogentisate 12-dioxygenase; Cupin 2 conserved barrel domain protein; KEGG: stp:Strop_4258 homogentisate 1,2-dioxygenase.
 
 0.996
pat
Histidinol-phosphate aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
    
 0.956
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: stp:Strop_3195 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
 0.906
Sare_3922
PFAM: aminotransferase class I and II; KEGG: stp:Strop_3547 aminotransferase, class I and II.
    
 0.906
Sare_4686
Fumarylacetoacetase; KEGG: stp:Strop_4256 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969.
 
  
 0.888
Sare_0864
PFAM: Amidase; KEGG: stp:Strop_0921 amidase.
  
 
  0.811
Sare_3895
PFAM: Amidase; KEGG: stp:Strop_3520 amidase; Belongs to the amidase family.
  
 
  0.811
Sare_1964
PFAM: Acetamidase/Formamidase; KEGG: mva:Mvan_0644 acetamidase/formamidase.
     
 0.806
Sare_4679
PFAM: regulatory protein AsnC/Lrp family; KEGG: stp:Strop_4249 regulatory protein, AsnC/Lrp family.
 
     0.638
Sare_4681
PFAM: RDD domain containing protein; KEGG: stp:Strop_4251 RDD domain containing protein.
       0.540
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.