STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4698KEGG: stp:Strop_4268 hypothetical protein. (227 aa)    
Predicted Functional Partners:
Sare_3526
PFAM: cytochrome c class I; KEGG: stp:Strop_3294 cytochrome c, class I.
  
 
 0.921
Sare_3524
PFAM: Cytochrome b/b6 domain; KEGG: stp:Strop_3292 cytochrome b/b6, N-terminal domain.
   
 
 0.894
Sare_3525
PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_3293 Rieske (2Fe-2S) domain protein.
  
 
 0.887
Sare_3531
Cytochrome-c oxidase; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
 
   0.876
Sare_3532
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
   0.852
Sare_1238
KEGG: stp:Strop_1329 hypothetical protein.
    
   0.842
Sare_3527
PFAM: cytochrome c oxidase subunit III; KEGG: stp:Strop_3295 cytochrome c oxidase, subunit III.
  
   0.839
Sare_0983
Cytochrome c oxidase subunit I type; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
  
   0.816
Sare_2295
Cytochrome c oxidase subunit I type; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
  
   0.816
Sare_0284
PFAM: phosphoesterase PA-phosphatase related; KEGG: stp:Strop_0243 phosphoesterase, PA-phosphatase related.
  
     0.754
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.