STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4701KEGG: stp:Strop_4271 hypothetical protein. (236 aa)    
Predicted Functional Partners:
Sare_0891
KEGG: stp:Strop_0949 hypothetical protein.
   
    0.724
Sare_2786
KEGG: stp:Strop_2588 hypothetical protein.
  
     0.502
Sare_0821
KEGG: stp:Strop_0876 hypothetical protein.
  
     0.475
Sare_0509
KEGG: stp:Strop_0421 hypothetical protein.
  
    0.446
Sare_0260
KEGG: stp:Strop_0221 hypothetical protein.
  
     0.427
Sare_1735
KEGG: stp:Strop_1750 hypothetical protein.
  
     0.425
Sare_1494
KEGG: stp:Strop_1549 hypothetical protein.
  
     0.419
Sare_1561
PFAM: conserved hypothetical protein; KEGG: stp:Strop_1601 hypothetical protein.
  
     0.418
def-4
Formylmethionine deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.418
Sare_4707
PFAM: amino acid-binding ACT domain protein; KEGG: stp:Strop_4273 amino acid-binding ACT domain protein.
       0.418
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.