STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4739KEGG: stp:Strop_4303 hypothetical protein. (197 aa)    
Predicted Functional Partners:
Sare_4737
KEGG: stp:Strop_4301 hypothetical protein.
       0.855
Sare_4736
KEGG: stp:Strop_4300 hypothetical protein.
       0.833
Sare_4735
KEGG: stp:Strop_4299 hypothetical protein.
       0.823
Sare_4738
PFAM: peptidase M23B; KEGG: stp:Strop_4302 peptidase M23B.
       0.816
Sare_4734
KEGG: stp:Strop_4298 hypothetical protein.
       0.770
Sare_4733
Hypothetical protein.
       0.649
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.