STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4741PFAM: cell divisionFtsK/SpoIIIE; KEGG: stp:Strop_4305 cell divisionFtsK/SpoIIIE. (879 aa)    
Predicted Functional Partners:
Sare_4442
PFAM: protein of unknown function DUF909; KEGG: stp:Strop_0478 hypothetical protein; Belongs to the WXG100 family.
   
 
 0.839
Sare_4742
KEGG: stp:Strop_4306 hypothetical protein.
       0.799
Sare_4736
KEGG: stp:Strop_4300 hypothetical protein.
  
     0.734
Sare_2111
KEGG: stp:Strop_2359 GCN5-related N-acetyltransferase.
  
     0.725
Sare_3541
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: stp:Strop_3309 tetratricopeptide TPR_2 repeat protein.
 
     0.725
Sare_3915
KEGG: stp:Strop_3540 hypothetical protein.
  
     0.722
Sare_1720
PFAM: sulfotransferase; KEGG: stp:Strop_1735 sulfotransferase.
  
     0.717
Sare_4734
KEGG: stp:Strop_4298 hypothetical protein.
  
     0.708
Sare_1635
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: stp:Strop_1650 regulatory protein, LuxR.
  
     0.707
Sare_4735
KEGG: stp:Strop_4299 hypothetical protein.
 
     0.705
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.