STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4765PFAM: protein of unknown function DUF1446; KEGG: stp:Strop_4325 protein of unknown function DUF1446. (562 aa)    
Predicted Functional Partners:
Sare_4763
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: stp:Strop_4323 regulatory protein, TetR.
 
     0.928
Sare_4767
PFAM: carboxyl transferase; KEGG: stp:Strop_4327 propionyl-CoA carboxylase.
 
  
 0.922
Sare_4764
PFAM: Wyosine base formation domain protein; KEGG: stp:Strop_4324 wyosine base formation.
 
     0.913
Sare_4769
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: stp:Strop_4329 acyl-CoA dehydrogenase domain protein.
 
    0.849
Sare_4766
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: stp:Strop_4326 acyl-CoA dehydrogenase domain protein.
 
    0.838
Sare_4688
PFAM: homogentisate 12-dioxygenase; Cupin 2 conserved barrel domain protein; KEGG: stp:Strop_4258 homogentisate 1,2-dioxygenase.
  
 
 0.783
Sare_4768
Carbamoyl-phosphate synthase L chain ATP-binding; PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: stp:Strop_4328 carbamoyl-phosphate synthase L chain, ATP-binding.
 
  
 0.773
Sare_4675
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
    0.550
Sare_3151
Beta-ketoacyl synthase; PFAM: Thioesterase; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; Erythronolide synthase docking; KEGG: sen:SACE_4139 type I modular polyketide synthase.
  
  
 0.489
Sare_0033
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: stp:Strop_0027 propionyl-CoA carboxylase.
  
  
 0.478
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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