STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4783Hypothetical protein; KEGG: nfa:nfa35640 putative transporter. (557 aa)    
Predicted Functional Partners:
Sare_1016
KEGG: stp:Strop_1125 hypothetical protein.
 
   
 0.608
Sare_3498
Conserved hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
   
 0.533
Sare_3312
PFAM: cytochrome oxidase assembly; KEGG: stp:Strop_3085 cytochrome oxidase assembly.
     
 0.527
Sare_1358
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: stp:Strop_1400 PspA/IM30 family protein.
  
     0.510
Sare_5074
KEGG: stp:Strop_4559 hypothetical protein.
 
     0.496
Sare_4781
KEGG: stp:Strop_4339 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.479
cutC
CutC family protein; Participates in the control of copper homeostasis. Belongs to the CutC family.
       0.479
Sare_4779
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_4337 binding-protein-dependent transport systems inner membrane component.
       0.464
Sare_4780
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_4338 binding-protein-dependent transport systems inner membrane component.
       0.464
Sare_1343
KEGG: stp:Strop_1385 hypothetical protein.
 
   
 0.458
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.