STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4790KEGG: sco:SCO3576 hypothetical protein. (51 aa)    
Predicted Functional Partners:
Sare_4789
PFAM: Endoribonuclease L-PSP; KEGG: stp:Strop_4348 endoribonuclease L-PSP.
  
    0.925
Sare_4787
Adenylate/guanylate cyclase with TPR repeats; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: stp:Strop_4346 adenylyl cyclase class-3/4/guanylyl cyclase.
       0.831
Sare_4788
PFAM: beta-lactamase domain protein; KEGG: stp:Strop_4347 beta-lactamase domain protein.
       0.831
Sare_0656
KEGG: stp:Strop_0709 hypothetical protein.
  
     0.772
Sare_4791
KEGG: stp:Strop_4349 hypothetical protein.
       0.641
Sare_4793
PFAM: Anion-transporting ATPase; KEGG: stp:Strop_4351 anion-transporting ATPase.
       0.522
Sare_4115
KEGG: stp:Strop_3734 hypothetical protein.
  
     0.454
Sare_4794
KEGG: stp:Strop_4352 hypothetical protein.
       0.451
Sare_4422
KEGG: stp:Strop_4040 hypothetical protein.
  
     0.446
Sare_4798
PFAM: metallophosphoesterase; KEGG: stp:Strop_4356 metallophosphoesterase.
 
     0.412
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.