STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4823PFAM: Ferritin Dps family protein; KEGG: stp:Strop_3998 hypothetical protein; Belongs to the Dps family. (155 aa)    
Predicted Functional Partners:
clpS
ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
   
 
 0.881
Sare_3183
PFAM: flavodoxin/nitric oxide synthase; KEGG: stp:Strop_1973 flavodoxin/nitric oxide synthase; Belongs to the WrbA family.
  
  
 0.732
hpf
Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.648
Sare_3931
KEGG: stp:Strop_3557 hypothetical protein.
  
    0.648
Sare_2276
PFAM: OsmC family protein; KEGG: stp:Strop_2129 hypothetical protein.
  
  
 0.600
Sare_4367
PFAM: OsmC family protein; KEGG: stp:Strop_3983 OsmC family protein.
  
  
 0.568
Sare_4822
PFAM: alpha/beta hydrolase fold; KEGG: stp:Strop_3997 alpha/beta hydrolase fold.
 
     0.561
Sare_0646
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: stp:Strop_0699 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
    
 
 0.520
Sare_2202
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.424
Sare_0534
TIGRFAM: copper ion binding protein; PFAM: Heavy metal transport/detoxification protein; KEGG: stp:Strop_0446 heavy metal transport/detoxification protein.
  
  
 0.416
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.