STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sare_4838TIGRFAM: protein of unknown function DUF571; KEGG: stp:Strop_1439 hypothetical protein. (468 aa)    
Predicted Functional Partners:
Sare_4839
PFAM: protein of unknown function DUF690; KEGG: stp:Strop_1440 protein of unknown function DUF690.
 
 
 
 0.955
Sare_4837
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: stp:Strop_1438 cell divisionFtsK/SpoIIIE.
 
 
 0.939
Sare_4840
KEGG: sen:SACE_5459 hypothetical protein.
 
     0.939
Sare_4841
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; Parallel beta-helix repeat; KEGG: sen:SACE_5457 putative sporulation protein (partial match).
 
   
 0.894
Sare_4835
KEGG: mgi:Mflv_3843 hypothetical protein.
 
     0.884
Sare_2228
PFAM: protein of unknown function DUF690; KEGG: stp:Strop_0477 protein of unknown function DUF690.
 
 
 
 0.807
Sare_0939
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: stp:Strop_1438 cell divisionFtsK/SpoIIIE.
 
 
 0.797
Sare_0941
PFAM: protein of unknown function DUF690; Conotoxin TVIIAGS; KEGG: stp:Strop_1440 protein of unknown function DUF690.
 
 
 
 0.792
Sare_4753
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: stp:Strop_0474 cell divisionFtsK/SpoIIIE.
 
 
 0.767
Sare_4831
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
 
     0.765
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.